IL_9SS6_052

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_052 not in the Motif Atlas

Geometric match to IL_8B0X_052

Geometric discrepancy: 0.1657

The information below is about IL_8B0X_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32376.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

9SS6|1|D1|C|1158
9SS6|1|D1|U|1159
9SS6|1|D1|G|1160
9SS6|1|D1|C|1161
*
9SS6|1|D1|G|1175
9SS6|1|D1|A|1176
9SS6|1|D1|G|1177
9SS6|1|D1|G|1178
9SS6|1|D1|A|1179
9SS6|1|D1|A|1180
9SS6|1|D1|G|1181

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AA

Small ribosomal subunit protein uS2

Chain AH

Small ribosomal subunit protein uS9