IL_9SS6_058

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_058 not in the Motif Atlas

Homologous match to IL_6CZR_368

Geometric discrepancy: 0.1259

The information below is about IL_6CZR_368

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.3

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9SS6|1|D1|G|1401
9SS6|1|D1|C|1402
9SS6|1|D1|C|1403
9SS6|1|D1|C|1404
*
9SS6|1|D1|G|1497
9SS6|1|D1|U|1498
9SS6|1|D1|A|1499
9SS6|1|D1|A|1500
9SS6|1|D1|C|1501

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain D2

Large subunit ribosomal RNA; LSU rRNA