IL_9SS6_059

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_059 not in the Motif Atlas

Geometric match to IL_8CRE_468

Geometric discrepancy: 0.0611

The information below is about IL_8CRE_468

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

9SS6|1|D1|G|1405
9SS6|1|D1|U|1406
9SS6|1|D1|C|1407
*
9SS6|1|D1|G|1494
9SS6|1|D1|U|1495
9SS6|1|D1|C|1496

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain D2

Large subunit ribosomal RNA; LSU rRNA