IL_9SS6_060

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

9SS6|1|D1|A|1492, 9SS6|1|D1|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_060 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2533

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9SS6|1|D1|C|1407
9SS6|1|D1|A|1408
9SS6|1|D1|C|1409
*
9SS6|1|D1|G|1491
9SS6|1|D1|A|1492
9SS6|1|D1|A|1493
9SS6|1|D1|G|1494

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AK

Small ribosomal subunit protein uS12

Chain D2

Large subunit ribosomal RNA; LSU rRNA