IL_9SS6_071

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_071 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.0873

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9SS6|1|D2|G|188
9SS6|1|D2|G|189
9SS6|1|D2|A|190
9SS6|1|D2|A|191
9SS6|1|D2|C|192
9SS6|1|D2|U|193
9SS6|1|D2|G|194
*
9SS6|1|D2|C|201
9SS6|1|D2|U|202
9SS6|1|D2|A|203
9SS6|1|D2|A|204
9SS6|1|D2|G|205
9SS6|1|D2|U|206
9SS6|1|D2|A|207
9SS6|1|D2|C|208

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B1

Large ribosomal subunit protein bL28

Chain BO

Large ribosomal subunit protein uL15