IL_9SS6_098
3D structure
- PDB id
- 9SS6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from RimM-KO
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 9SS6|1|D2|A|1156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SS6_098 not in the Motif Atlas
- Homologous match to IL_7A0S_033
- Geometric discrepancy: 0.0881
- The information below is about IL_7A0S_033
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.1
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
9SS6|1|D2|C|998
9SS6|1|D2|U|999
9SS6|1|D2|A|1000
9SS6|1|D2|A|1001
9SS6|1|D2|G|1002
*
9SS6|1|D2|C|1153
9SS6|1|D2|G|1154
9SS6|1|D2|A|1155
9SS6|1|D2|A|1156
9SS6|1|D2|G|1157
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B3
- Large ribosomal subunit protein uL30
- Chain BT
- Large ribosomal subunit protein bL20
- Chain BU
- Large ribosomal subunit protein bL21
- Chain D3
- 5S ribosomal RNA; 5S rRNA
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