IL_9SS6_099

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_099 not in the Motif Atlas

Homologous match to IL_7A0S_034

Geometric discrepancy: 0.1905

The information below is about IL_7A0S_034

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

9SS6|1|D2|U|1004
9SS6|1|D2|C|1005
9SS6|1|D2|C|1006
9SS6|1|D2|C|1007
9SS6|1|D2|A|1008
9SS6|1|D2|A|1009
9SS6|1|D2|A|1010
9SS6|1|D2|G|1011
*
9SS6|1|D2|C|1150
9SS6|1|D2|A|1151

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BM

Large ribosomal subunit protein uL13

Chain BT

Large ribosomal subunit protein bL20