IL_9SS6_101

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9SS6|1|D2|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_101 not in the Motif Atlas

Homologous match to IL_7A0S_036

Geometric discrepancy: 0.2886

The information below is about IL_7A0S_036

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

9SS6|1|D2|U|1018
9SS6|1|D2|U|1019
9SS6|1|D2|A|1020
9SS6|1|D2|A|1021
9SS6|1|D2|G|1022
9SS6|1|D2|U|1023
9SS6|1|D2|G|1024
*
9SS6|1|D2|C|1140
9SS6|1|D2|U|1141
9SS6|1|D2|A|1142
9SS6|1|D2|A|1143
9SS6|1|D2|A|1144

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B9

Large ribosomal subunit protein bL36A

Chain BM

Large ribosomal subunit protein uL13