IL_9SS6_105
3D structure
- PDB id
- 9SS6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from RimM-KO
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CCCAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 9SS6|1|D2|A|1046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SS6_105 not in the Motif Atlas
- Geometric match to IL_4V9F_042
- Geometric discrepancy: 0.2236
- The information below is about IL_4V9F_042
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.3
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
9SS6|1|D2|C|1043
9SS6|1|D2|C|1044
9SS6|1|D2|C|1045
9SS6|1|D2|A|1046
9SS6|1|D2|G|1047
9SS6|1|D2|A|1048
9SS6|1|D2|C|1049
9SS6|1|D2|A|1050
9SS6|1|D2|G|1051
*
9SS6|1|D2|U|1108
9SS6|1|D2|C|1109
9SS6|1|D2|G|1110
9SS6|1|D2|A|1111
9SS6|1|D2|G|1112
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain BF
- Large ribosomal subunit protein uL6
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