IL_9SS6_111

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_111 not in the Motif Atlas

Homologous match to IL_7A0S_045

Geometric discrepancy: 0.1209

The information below is about IL_7A0S_045

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9SS6|1|D2|A|1262
9SS6|1|D2|U|1263
9SS6|1|D2|A|1264
9SS6|1|D2|A|1265
9SS6|1|D2|G|1266
9SS6|1|D2|U|1267
9SS6|1|D2|A|1268
9SS6|1|D2|A|1269
*
9SS6|1|D2|U|2011
9SS6|1|D2|G|2012
9SS6|1|D2|A|2013
9SS6|1|D2|A|2014
9SS6|1|D2|A|2015
9SS6|1|D2|U|2016
9SS6|1|D2|U|2017

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B5

Large ribosomal subunit protein bL32

Chain BD

Large ribosomal subunit protein uL4

Chain BV

Large ribosomal subunit protein uL22