IL_9SS6_115

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_115 not in the Motif Atlas

Homologous match to IL_7A0S_049

Geometric discrepancy: 0.2426

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9SS6|1|D2|C|1357
9SS6|1|D2|G|1358
9SS6|1|D2|A|1359
9SS6|1|D2|G|1360
9SS6|1|D2|G|1361
*
9SS6|1|D2|C|1370
9SS6|1|D2|G|1371
9SS6|1|D2|U|1372
9SS6|1|D2|A|1373
9SS6|1|D2|G|1374

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B7

Large ribosomal subunit protein bL34

Chain BB

Large ribosomal subunit protein uL2