IL_9SS6_132

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

9SS6|1|D2|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_132 not in the Motif Atlas

Geometric match to IL_8B0X_128

Geometric discrepancy: 0.0843

The information below is about IL_8B0X_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9SS6|1|D2|U|1712
9SS6|1|D2|A|1713
9SS6|1|D2|U|1714
9SS6|1|D2|G|1715
9SS6|1|D2|U|1716
9SS6|1|D2|A|1717
9SS6|1|D2|G|1718
*
9SS6|1|D2|U|1742
9SS6|1|D2|G|1743
9SS6|1|D2|A|1744
9SS6|1|D2|A|1745
9SS6|1|D2|A|1746

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains