IL_9SS6_157

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_157 not in the Motif Atlas

Homologous match to IL_7A0S_085

Geometric discrepancy: 0.1096

The information below is about IL_7A0S_085

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

9SS6|1|D2|U|2457
9SS6|1|D2|G|2458
9SS6|1|D2|A|2459
*
9SS6|1|D2|U|2493
9SS6|1|D2|G|2494

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BP

50S ribosomal protein L16