IL_9SS6_159

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_159 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.1282

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9SS6|1|D2|C|2466
9SS6|1|D2|C|2467
9SS6|1|D2|A|2468
9SS6|1|D2|A|2469
9SS6|1|D2|G|2470
*
9SS6|1|D2|C|2480
9SS6|1|D2|G|2481
9SS6|1|D2|A|2482
9SS6|1|D2|C|2483
9SS6|1|D2|G|2484

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B9

Large ribosomal subunit protein bL36A

Chain BP

50S ribosomal protein L16