IL_9SS6_166

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_166 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.1195

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9SS6|1|D2|C|2652
9SS6|1|D2|U|2653
9SS6|1|D2|A|2654
9SS6|1|D2|G|2655
9SS6|1|D2|U|2656
9SS6|1|D2|A|2657
9SS6|1|D2|C|2658
*
9SS6|1|D2|G|2663
9SS6|1|D2|G|2664
9SS6|1|D2|A|2665
9SS6|1|D2|C|2666
9SS6|1|D2|C|2667
9SS6|1|D2|G|2668

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BF

Large ribosomal subunit protein uL6