IL_9SS6_170

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

9SS6|1|D2|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_170 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.1553

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9SS6|1|D2|G|2737
9SS6|1|D2|A|2738
9SS6|1|D2|U|2739
9SS6|1|D2|A|2740
9SS6|1|D2|A|2741
9SS6|1|D2|G|2742
*
9SS6|1|D2|C|2762
9SS6|1|D2|G|2763
9SS6|1|D2|A|2764
9SS6|1|D2|A|2765
9SS6|1|D2|A|2766
9SS6|1|D2|C|2767

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B9

Large ribosomal subunit protein bL36A

Chain BF

Large ribosomal subunit protein uL6

Chain BM

Large ribosomal subunit protein uL13