IL_9SUM_050
3D structure
- PDB id
- 9SUM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 9SUM|1|A|C|1143, 9SUM|1|A|A|1249, 9SUM|1|A|U|1252, 9SUM|1|A|G|1253
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34501.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
9SUM|1|A|G|1141
9SUM|1|A|A|1142
9SUM|1|A|C|1143
9SUM|1|A|A|1144
9SUM|1|A|C|1145
9SUM|1|A|C|1146
9SUM|1|A|A|1147
9SUM|1|A|C|1148
9SUM|1|A|A|1149
9SUM|1|A|A|1150
9SUM|1|A|A|1151
9SUM|1|A|A|1152
*
9SUM|1|A|U|1246
9SUM|1|A|G|1247
9SUM|1|A|A|1248
9SUM|1|A|A|1249
9SUM|1|A|A|1250
9SUM|1|A|A|1251
9SUM|1|A|U|1252
9SUM|1|A|G|1253
9SUM|1|A|G|1254
9SUM|1|A|A|1255
9SUM|1|A|U|1256
9SUM|1|A|G|1257
9SUM|1|A|G|1258
9SUM|1|A|C|1259
9SUM|1|A|G|1260
9SUM|1|A|C|1261
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain E
- Large ribosomal subunit protein uL3
- Chain I
- 60S ribosomal protein L7
- Chain L
- 60S ribosomal protein L10
- Chain Q
- 60S ribosomal protein L16-B
- Chain h
- 60S ribosomal protein L33-A
- Chain o
- Large ribosomal subunit protein eL40
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