IL_9SUM_072

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

9SUM|1|A|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28217.4

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

12

Unit IDs

9SUM|1|A|A|1843
9SUM|1|A|G|1844
9SUM|1|A|U|1845
9SUM|1|A|C|1846
9SUM|1|A|G|1847
9SUM|1|A|G|1848
*
9SUM|1|A|C|2248
9SUM|1|A|U|2249
9SUM|1|A|G|2250
9SUM|1|A|U|2251

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain X

60S ribosomal protein L23-B