IL_9SUM_083

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9SUM|1|A|A|2196, 9SUM|1|A|C|2202, 9SUM|1|A|C|2221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.4

Basepair signature

cWW-L-tHH-cHW-cWW-L-L-R-L

Number of instances in this motif group

10

Unit IDs

9SUM|1|A|C|2192
9SUM|1|A|C|2193
9SUM|1|A|A|2194
9SUM|1|A|A|2195
9SUM|1|A|A|2196
9SUM|1|A|U|2197
9SUM|1|A|G|2198
9SUM|1|A|C|2199
9SUM|1|A|C|2200
9SUM|1|A|U|2201
9SUM|1|A|C|2202
9SUM|1|A|G|2203
*
9SUM|1|A|C|2219
9SUM|1|A|G|2220
9SUM|1|A|C|2221
9SUM|1|A|G|2222

Current chains

Chain A

25S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain p

Small ribosomal subunit protein eS32