IL_9SUM_110

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CUUAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34443.2

Basepair signature

cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9SUM|1|A|C|2919
9SUM|1|A|U|2920
9SUM|1|A|U|2921
9SUM|1|A|A|2922
9SUM|1|A|G|2923
9SUM|1|A|U|2924
9SUM|1|A|A|2925
9SUM|1|A|C|2926
*
9SUM|1|A|G|2931
9SUM|1|A|G|2932
9SUM|1|A|A|2933
9SUM|1|A|A|2934
9SUM|1|A|C|2935
9SUM|1|A|C|2936
9SUM|1|A|G|2937

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain K

60S ribosomal protein L9-B

Chain X

60S ribosomal protein L23-B

Chain o

Large ribosomal subunit protein eL40