IL_9SUM_114

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

9SUM|1|A|A|3031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08938.4

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9SUM|1|A|A|3004
9SUM|1|A|U|3005
9SUM|1|A|U|3006
9SUM|1|A|A|3007
9SUM|1|A|U|3008
*
9SUM|1|A|A|3028
9SUM|1|A|G|3029
9SUM|1|A|A|3030
9SUM|1|A|A|3031
9SUM|1|A|U|3032

Current chains

Chain A

25S rRNA

Nearby chains

Chain K

60S ribosomal protein L9-B

Chain Q

60S ribosomal protein L16-B

Chain o

Large ribosomal subunit protein eL40