IL_9SUM_146

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31545.4

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9SUM|1|CA|U|116
9SUM|1|CA|U|117
9SUM|1|CA|A|118
9SUM|1|CA|U|119
9SUM|1|CA|U|120
9SUM|1|CA|U|121
*
9SUM|1|CA|A|284
9SUM|1|CA|U|285
9SUM|1|CA|U|286
9SUM|1|CA|C|287
9SUM|1|CA|A|288

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZA

40S ribosomal protein S8

Chain w

40S ribosomal protein S4