IL_9SUM_167

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

9SUM|1|CA|A|568, 9SUM|1|CA|U|570, 9SUM|1|CA|U|571

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52042.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9SUM|1|CA|G|551
9SUM|1|CA|U|552
9SUM|1|CA|G|553
9SUM|1|CA|C|554
9SUM|1|CA|C|555
9SUM|1|CA|A|556
9SUM|1|CA|G|557
*
9SUM|1|CA|C|564
9SUM|1|CA|G|565
9SUM|1|CA|G|566
9SUM|1|CA|U|567
9SUM|1|CA|A|568
9SUM|1|CA|A|569
9SUM|1|CA|U|570
9SUM|1|CA|U|571
9SUM|1|CA|C|572

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZP

40S ribosomal protein S23

Chain ZW

Small ribosomal subunit protein eS30

Chain v

Small ribosomal subunit protein uS3