IL_9SUM_170

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.4

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

21

Unit IDs

9SUM|1|CA|C|616
9SUM|1|CA|G|617
9SUM|1|CA|U|618
9SUM|1|CA|A|619
9SUM|1|CA|G|620
*
9SUM|1|CA|U|938
9SUM|1|CA|C|939
9SUM|1|CA|A|940
9SUM|1|CA|A|941
9SUM|1|CA|G|942

Current chains

Chain CA

18S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain ZD

40S ribosomal protein S11-A

Chain ZE

40S ribosomal protein S13

Chain ZO

40S ribosomal protein S22

Chain ZP

40S ribosomal protein S23