IL_9SUM_175

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GAGUAAAUG*CUGUUAGC

Length

17 nucleotides

Bulged bases

9SUM|1|CA|U|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59049.5

Basepair signature

cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9SUM|1|CA|G|722
9SUM|1|CA|A|723
9SUM|1|CA|G|724
9SUM|1|CA|U|725
9SUM|1|CA|A|726
9SUM|1|CA|A|727
9SUM|1|CA|A|728
9SUM|1|CA|U|729
9SUM|1|CA|G|730
*
9SUM|1|CA|C|761
9SUM|1|CA|U|762
9SUM|1|CA|G|763
9SUM|1|CA|U|764
9SUM|1|CA|U|765
9SUM|1|CA|A|766
9SUM|1|CA|G|767
9SUM|1|CA|C|768

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZB

40S ribosomal protein S9-A

Chain ZD

40S ribosomal protein S11-A

Chain ZO

40S ribosomal protein S22

Chain w

40S ribosomal protein S4