IL_9SUM_187

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GGCGU*GACGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.6

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

9SUM|1|CA|G|1020
9SUM|1|CA|G|1021
9SUM|1|CA|C|1022
9SUM|1|CA|G|1023
9SUM|1|CA|U|1024
*
9SUM|1|CA|G|1034
9SUM|1|CA|A|1035
9SUM|1|CA|C|1036
9SUM|1|CA|G|1037
9SUM|1|CA|C|1038

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZI

40S ribosomal protein S17-B

Chain ZT

40S ribosomal protein S27

Chain s

Small ribosomal subunit protein uS2

Chain t

Small ribosomal subunit protein eS1