IL_9SUM_189

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84044.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

7

Unit IDs

9SUM|1|CA|G|1081
9SUM|1|CA|G|1082
9SUM|1|CA|A|1083
9SUM|1|CA|G|1084
9SUM|1|CA|U|1085
9SUM|1|CA|A|1086
9SUM|1|CA|U|1087
9SUM|1|CA|G|1088
*
9SUM|1|CA|U|1099
9SUM|1|CA|G|1100
9SUM|1|CA|A|1101
9SUM|1|CA|A|1102
9SUM|1|CA|A|1103
9SUM|1|CA|C|1104

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZP

40S ribosomal protein S23

Chain p

Small ribosomal subunit protein eS32