IL_9SUM_192

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

9SUM|1|CA|C|1128, 9SUM|1|CA|C|1129

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63596.15

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

24

Unit IDs

9SUM|1|CA|A|1127
9SUM|1|CA|C|1128
9SUM|1|CA|C|1129
9SUM|1|CA|A|1130
*
9SUM|1|CA|U|1592
9SUM|1|CA|C|1593
9SUM|1|CA|C|1594
9SUM|1|CA|C|1595
9SUM|1|CA|U|1596

Current chains

Chain CA

18S rRNA

Nearby chains

Chain 1

Transfer RNA; tRNA

Chain ZH

Small ribosomal subunit protein uS9

Chain ZS

40S ribosomal protein S26

Chain ZU

40S ribosomal protein S28-A

Chain x

40S ribosomal protein uS7 (formerly S5)