IL_9SUM_197

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CAC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SUM_197 not in the Motif Atlas

Geometric match to IL_9PN5_162

Geometric discrepancy: 0.1531

The information below is about IL_9PN5_162

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

9SUM|1|CA|C|1190
9SUM|1|CA|A|1191
9SUM|1|CA|C|1192
*
9SUM|1|CA|G|1231
9SUM|1|CA|U|1232
9SUM|1|CA|G|1233

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZC

40S ribosomal protein S10-A