IL_9SUM_209

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

9SUM|1|CA|A|1315, 9SUM|1|CA|U|1316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.5

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

5

Unit IDs

9SUM|1|CA|A|1314
9SUM|1|CA|A|1315
9SUM|1|CA|U|1316
9SUM|1|CA|A|1317
*
9SUM|1|CA|U|1353
9SUM|1|CA|U|1354
9SUM|1|CA|C|1355
9SUM|1|CA|U|1356

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZH

Small ribosomal subunit protein uS9

Chain ZL

Small ribosomal subunit protein uS10

Chain ZY

Small ribosomal subunit protein RACK1

Chain v

Small ribosomal subunit protein uS3