IL_9SUM_217

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.5

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9SUM|1|CA|G|1613
9SUM|1|CA|C|1614
9SUM|1|CA|C|1615
9SUM|1|CA|C|1616
*
9SUM|1|CA|G|1735
9SUM|1|CA|U|1736
9SUM|1|CA|A|1737
9SUM|1|CA|A|1738
9SUM|1|CA|C|1739

Current chains

Chain CA

18S rRNA

Nearby chains

Chain 1

Transfer RNA; tRNA

Chain 2

RNA (5'-R(P*CP*GP*A)-3')

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain p

Small ribosomal subunit protein eS32