IL_9SX2_013

3D structure

PDB id

9SX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S Doxycycline Bound E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

9SX2|1|A|U|244, 9SX2|1|A|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SX2_013 not in the Motif Atlas

Homologous match to IL_6CZR_123

Geometric discrepancy: 0.1435

The information below is about IL_6CZR_123

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.2

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

9SX2|1|A|G|242
9SX2|1|A|A|243
9SX2|1|A|U|244
9SX2|1|A|U|245
9SX2|1|A|A|246
9SX2|1|A|G|247
*
9SX2|1|A|C|277
9SX2|1|A|G|278
9SX2|1|A|A|279
9SX2|1|A|C|280
9SX2|1|A|G|281
9SX2|1|A|A|282
9SX2|1|A|U|283
9SX2|1|A|C|284

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein uS17