IL_9SX2_016

3D structure

PDB id

9SX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S Doxycycline Bound E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

UUG*CA

Length

5 nucleotides

Bulged bases

9SX2|1|A|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SX2_016 not in the Motif Atlas

Homologous match to IL_6CZR_126

Geometric discrepancy: 0.1504

The information below is about IL_6CZR_126

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

9SX2|1|A|U|367
9SX2|1|A|U|368
9SX2|1|A|G|369
*
9SX2|1|A|C|392
9SX2|1|A|A|393

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16