IL_9SX2_019

3D structure

PDB id

9SX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S Doxycycline Bound E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SX2_019 not in the Motif Atlas

Geometric match to IL_8B0X_019

Geometric discrepancy: 0.053

The information below is about IL_8B0X_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9SX2|1|A|U|409
9SX2|1|A|G|410
9SX2|1|A|A|411
9SX2|1|A|A|412
9SX2|1|A|G|413
9SX2|1|A|A|414
9SX2|1|A|A|415
9SX2|1|A|G|416
*
9SX2|1|A|U|427
9SX2|1|A|G|428
9SX2|1|A|U|429
9SX2|1|A|A|430
9SX2|1|A|A|431
9SX2|1|A|A|432
9SX2|1|A|G|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4