IL_9SX2_035

3D structure

PDB id

9SX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S Doxycycline Bound E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SX2_035 not in the Motif Atlas

Homologous match to IL_6CZR_144

Geometric discrepancy: 0.1563

The information below is about IL_6CZR_144

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

9SX2|1|A|G|774
9SX2|1|A|G|775
9SX2|1|A|G|776
9SX2|1|A|A|777
9SX2|1|A|G|778
*
9SX2|1|A|U|804
9SX2|1|A|C|805

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain K

Small ribosomal subunit protein uS11