IL_9SX2_040

3D structure

PDB id

9SX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S Doxycycline Bound E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

9SX2|1|A|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SX2_040 not in the Motif Atlas

Homologous match to IL_6CZR_410

Geometric discrepancy: 0.1857

The information below is about IL_6CZR_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47078.2

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

9SX2|1|A|G|933
9SX2|1|A|C|934
9SX2|1|A|A|935
*
9SX2|1|A|U|1380
9SX2|1|A|U|1381
9SX2|1|A|C|1382
9SX2|1|A|C|1383
9SX2|1|A|C|1384

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein uS7

Chain I

Small ribosomal subunit protein uS9