IL_9SX2_059

3D structure

PDB id

9SX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S Doxycycline Bound E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GU(5MC)*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SX2_059 not in the Motif Atlas

Geometric match to IL_9H3G_235

Geometric discrepancy: 0.0719

The information below is about IL_9H3G_235

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

9SX2|1|A|G|1405
9SX2|1|A|U|1406
9SX2|1|A|5MC|1407
*
9SX2|1|A|G|1494
9SX2|1|A|U|1495
9SX2|1|A|C|1496

Current chains

Chain A

16S ribosomal RNA

Nearby chains