IL_9SYR_006

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CUCAGUAA*UGAACAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_006 not in the Motif Atlas

Homologous match to IL_8GLP_006

Geometric discrepancy: 0.0726

The information below is about IL_8GLP_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.6

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9SYR|1|L1|C|81
9SYR|1|L1|U|82
9SYR|1|L1|C|83
9SYR|1|L1|A|84
9SYR|1|L1|G|85
9SYR|1|L1|U|86
9SYR|1|L1|A|87
9SYR|1|L1|A|88
*
9SYR|1|L1|U|96
9SYR|1|L1|G|97
9SYR|1|L1|A|98
9SYR|1|L1|A|99
9SYR|1|L1|C|100
9SYR|1|L1|A|101
9SYR|1|L1|G|102

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L15

Chain LP

Large ribosomal subunit protein eL13

Chain Lh

60S ribosomal protein L18

Chain Lr

60S ribosomal protein L27a