IL_9SYR_016
3D structure
- PDB id
- 9SYR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.55 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 9SYR|1|L1|G|409, 9SYR|1|L1|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SYR_016 not in the Motif Atlas
- Geometric match to IL_8GLP_019
- Geometric discrepancy: 0.0965
- The information below is about IL_8GLP_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.4
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 11
Unit IDs
9SYR|1|L1|G|387
9SYR|1|L1|A|388
9SYR|1|L1|A|389
9SYR|1|L1|C|390
*
9SYR|1|L1|G|401
9SYR|1|L1|A|402
9SYR|1|L1|G|403
9SYR|1|L1|U|404
9SYR|1|L1|U|405
9SYR|1|L1|C|406
9SYR|1|L1|A|407
9SYR|1|L1|A|408
9SYR|1|L1|G|409
9SYR|1|L1|A|410
9SYR|1|L1|G|411
9SYR|1|L1|G|412
9SYR|1|L1|G|413
9SYR|1|L1|C|414
Current chains
- Chain L1
- 28S rRNA
Nearby chains
- Chain L3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L39
- Chain LN
- Green fluorescent protein,Small ubiquitin-related modifier 1,Green fluorescent protein,Small ubiquitin-related modifier 1,Histone H4,X-box-binding protein 1,X-box-binding protein 1
- Chain Lg
- 60S ribosomal protein L17
- Chain Lp
- 60S ribosomal protein L26
- Chain Nd
- Ubiquitin-like protein SMT3,N-alpha-acetyltransferase 40
Coloring options: