IL_9SYR_063

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

9SYR|1|L1|G|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_063 not in the Motif Atlas

Homologous match to IL_8GLP_072

Geometric discrepancy: 0.1286

The information below is about IL_8GLP_072

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

9SYR|1|L1|C|1814
9SYR|1|L1|G|1815
9SYR|1|L1|C|1816
*
9SYR|1|L1|G|1823
9SYR|1|L1|G|1824

Current chains

Chain L1

28S rRNA

Nearby chains

Chain Ld

60S ribosomal protein L5

Chain Lk

60S ribosomal protein L21

Chain Ls

60S ribosomal protein L29