IL_9SYR_072

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9SYR|1|L1|U|1947

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_072 not in the Motif Atlas

Homologous match to IL_8GLP_081

Geometric discrepancy: 0.0888

The information below is about IL_8GLP_081

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9SYR|1|L1|G|1946
9SYR|1|L1|U|1947
9SYR|1|L1|G|1948
*
9SYR|1|L1|C|2035
9SYR|1|L1|C|2036

Current chains

Chain L1

28S rRNA

Nearby chains

Chain L2

5S ribosomal RNA; 5S rRNA

Chain LD

Ubiquitin-60S ribosomal protein L40

Chain LK

60S ribosomal protein L9

Chain Lj

60S ribosomal protein L18a