IL_9SYR_076

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CCUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9SYR|1|L1|U|2305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_076 not in the Motif Atlas

Homologous match to IL_8GLP_086

Geometric discrepancy: 0.0757

The information below is about IL_8GLP_086

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.4

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

31

Unit IDs

9SYR|1|L1|C|2302
9SYR|1|L1|C|2303
9SYR|1|L1|U|2304
9SYR|1|L1|U|2305
9SYR|1|L1|G|2306
9SYR|1|L1|A|2307
9SYR|1|L1|A|2308
9SYR|1|L1|G|2309
*
9SYR|1|L1|U|2329
9SYR|1|L1|G|2330
9SYR|1|L1|G|2331
9SYR|1|L1|A|2332
9SYR|1|L1|G|2333

Current chains

Chain L1

28S rRNA

Nearby chains

Chain L3

5.8S ribosomal RNA; 5.8S rRNA

Chain Lc

60S ribosomal protein L4

Chain Lp

60S ribosomal protein L26

Chain Lv

60S ribosomal protein L32

Chain Nd

Ubiquitin-like protein SMT3,N-alpha-acetyltransferase 40