IL_9SYR_086

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_086 not in the Motif Atlas

Homologous match to IL_8GLP_098

Geometric discrepancy: 0.1574

The information below is about IL_8GLP_098

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

59

Unit IDs

9SYR|1|L1|C|2614
9SYR|1|L1|C|2615
*
9SYR|1|L1|G|2722
9SYR|1|L1|U|2723
9SYR|1|L1|G|2724

Current chains

Chain L1

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L19

Chain Lx

60S ribosomal protein L34