IL_9SYR_093

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GGAA*U(OMC)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_093 not in the Motif Atlas

Geometric match to IL_8OI5_078

Geometric discrepancy: 0.0956

The information below is about IL_8OI5_078

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.5

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

37

Unit IDs

9SYR|1|L1|G|2847
9SYR|1|L1|G|2848
9SYR|1|L1|A|2849
9SYR|1|L1|A|2850
*
9SYR|1|L1|U|3840
9SYR|1|L1|OMC|3841

Current chains

Chain L1

28S rRNA

Nearby chains

Chain Lb

60S ribosomal protein L3

Chain Lm

60S ribosomal protein L23