IL_9SYR_100

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9SYR|1|L1|A|3663, 9SYR|1|L1|U|3679, 9SYR|1|L1|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|L1|C|3660
9SYR|1|L1|G|3661
9SYR|1|L1|A|3662
9SYR|1|L1|A|3663
9SYR|1|L1|G|3664
9SYR|1|L1|G|3665
*
9SYR|1|L1|U|3677
9SYR|1|L1|G|3678
9SYR|1|L1|U|3679
9SYR|1|L1|U|3680
9SYR|1|L1|G|3681
9SYR|1|L1|A|3682
9SYR|1|L1|C|3683
9SYR|1|L1|G|3684

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L37a

Chain La

60S ribosomal protein L8

Chain S1

Small subunit ribosomal RNA; SSU rRNA