IL_9SYR_106

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

9SYR|1|L1|A2M|3785, 9SYR|1|L1|C|3791, 9SYR|1|L1|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|L1|C|3781
9SYR|1|L1|5MC|3782
9SYR|1|L1|A|3783
9SYR|1|L1|A|3784
9SYR|1|L1|A2M|3785
9SYR|1|L1|U|3786
9SYR|1|L1|G|3787
9SYR|1|L1|C|3788
9SYR|1|L1|C|3789
9SYR|1|L1|U|3790
9SYR|1|L1|C|3791
9SYR|1|L1|OMG|3792
*
9SYR|1|L1|OMC|3808
9SYR|1|L1|G|3809
9SYR|1|L1|C|3810
9SYR|1|L1|G|3811

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L10

Chain S1

Small subunit ribosomal RNA; SSU rRNA

Chain Sq

60S ribosomal protein L41