IL_9SYR_116
3D structure
- PDB id
- 9SYR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.55 Å
Loop
- Sequence
- U(PSU)GA*(PSU)ACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SYR_116 not in the Motif Atlas
- Homologous match to IL_9AXU_094
- Geometric discrepancy: 0.1763
- The information below is about IL_9AXU_094
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.5
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 42
Unit IDs
9SYR|1|L1|U|4295
9SYR|1|L1|PSU|4296
9SYR|1|L1|G|4297
9SYR|1|L1|A|4298
*
9SYR|1|L1|PSU|4312
9SYR|1|L1|A|4313
9SYR|1|L1|C|4314
9SYR|1|L1|A|4315
Current chains
- Chain L1
- 28S rRNA
Nearby chains
- Chain LE
- 60S ribosomal protein L36a
- Chain Ld
- 60S ribosomal protein L5
- Chain Lh
- 60S ribosomal protein L18
- Chain Lk
- 60S ribosomal protein L21
- Chain Ls
- 60S ribosomal protein L29
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