IL_9SYR_154

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

9SYR|1|L2|C|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_154 not in the Motif Atlas

Geometric match to IL_8QYX_165

Geometric discrepancy: 0.1032

The information below is about IL_8QYX_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

9SYR|1|L2|C|15
9SYR|1|L2|A|16
*
9SYR|1|L2|U|62
9SYR|1|L2|C|63
9SYR|1|L2|G|64

Current chains

Chain L2

5S rRNA

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain LM

60S ribosomal protein L10

Chain LO

60S ribosomal protein L11

Chain Ld

60S ribosomal protein L5