IL_9SYR_164

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CAAA*UGA(OMC)G

Length

9 nucleotides

Bulged bases

9SYR|1|S1|A|516

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_164 not in the Motif Atlas

Geometric match to IL_8GLP_190

Geometric discrepancy: 0.1151

The information below is about IL_8GLP_190

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.5

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

50

Unit IDs

9SYR|1|S1|C|37
9SYR|1|S1|A|38
9SYR|1|S1|A|39
9SYR|1|S1|A|40
*
9SYR|1|S1|U|514
9SYR|1|S1|G|515
9SYR|1|S1|A|516
9SYR|1|S1|OMC|517
9SYR|1|S1|G|518

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S9

Chain Sw

Small ribosomal subunit protein eS4, X isoform