IL_9SYR_179

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

9SYR|1|S1|U|328

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_179 not in the Motif Atlas

Geometric match to IL_6M0X_002

Geometric discrepancy: 0.3377

The information below is about IL_6M0X_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9SYR|1|S1|C|322
9SYR|1|S1|C|323
*
9SYR|1|S1|G|327
9SYR|1|S1|U|328
9SYR|1|S1|G|329

Current chains

Chain S1

18S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L24

Chain Sy

40S ribosomal protein S6